Comparative structural analysis of MecA encoded beta-lactam resistance in MRSA

Authors

  • Anisha Pallikonda James Logan High School
  • Isaryhia Rodriguez California Institute of Technology

DOI:

https://doi.org/10.47611/jsrhs.v13i1.6399

Keywords:

mecA, MRSA, genomics

Abstract

As the level of antibiotic resistance in bacteria rises, the threat of patients facing fatal consequences from a simple cut or infection grows dramatically. One example of an emerging antibiotic-resistant threat is MRSA, methicillin-resistant staphylococcus aureus, which is a growing cause of hospital-acquired pneumonia, skin infections, and even sepsis through cross-contamination in health care settings. However, methicillin resistance like that exploited by MRSA is also highly conserved with that of another species of staphylococcus bacteria, Staphylococcus sciuri which is the ancestral bacterium of S. aureus. S. sciuri is a typically animal-associated bacterium with increasing clinical relevance as the amount of human infections from it has grown. Both these bacteria share the commonality of having the mecA gene that determines methicillin resistance transported through the mobile Staphylococcal cassette chromosome. This study focuses on the relationship between the mecA mobile element in S. sciuri compared to S. aureus and explores the specific role of S. sciuri in the creation of the mecA cassette. Understanding the cassette evolution and similarities and differences between S. sciuri and S. aureus will enable the continued tracking of S. sciuri as an emerging clinical threat. To answer all these questions, BLAST analysis, InterProScan, and additional computational analysis were used to characterize differences in homology, structure, function, and effect on infectivity, robustness of antibiotic resistance, and morbidity. The overall goal of this analysis is to characterize the differences between mecA and methicillin-resistant genes in clinically relevant MRSA as well as environmental samples such as S. sciuri.

Downloads

Download data is not yet available.

References or Bibliography

Nakou, A., Woodhead, M., & Torres, A. (2009). MRSA as a cause of community-acquired pneumonia. European Respiratory Journal, 34(5), 1013–1014. https://doi.org/10.1183/09031936.00120009

About Staphylococcus aureus—MN Dept. Of Health. (n.d.). Retrieved November 13, 2023, from https://www.health.state.mn.us/diseases/staph/basics.html

Penicillin Mechanism. (n.d.). Retrieved November 13, 2023, from https://www.news-medical.net/health/Penicillin-Mechanism.aspx

Dakić, I., Morrison, D., Vuković, D., Savić, B., Shittu, A., Ježek, P., Hauschild, T., & Stepanović, S. (2005). Isolation and Molecular Characterization of Staphylococcus sciuri in the Hospital Environment. Journal of Clinical Microbiology, 43(6), 2782–2785. https://doi.org/10.1128/JCM.43.6.2782-2785.2005

Miragaia, M. (2018). Factors Contributing to the Evolution of mecA-Mediated β-lactam Resistance in Staphylococci: Update and New Insights From Whole Genome Sequencing (WGS). Frontiers in Microbiology, 9. https://www.frontiersin.org/articles/10.3389/fmicb.2018.02723

UniProt. (n.d.). Retrieved November 13, 2023, from https://www.uniprot.org/uniprotkb/O54286/entry

Bioinformatics Tools for Multiple Sequence Alignment < EMBL-EBI. (n.d.). Retrieved November 13, 2023, from https://www.ebi.ac.uk/Tools/msa/

Galaxy. (n.d.). Retrieved November 13, 2023, from https://usegalaxy.org/

InterPro. (n.d.). Retrieved November 13, 2023, from https://www.ebi.ac.uk/interpro/

Amino acids. (n.d.). Retrieved November 13, 2023, from https://www.cup.uni-muenchen.de/ch/compchem/tink/as.html

Glutamine Information | Mount Sinai—New York. (n.d.). Retrieved November 13, 2023, from https://www.mountsinai.org/health-library/supplement/glutamine

Goder, V., & Spiess, M. (2001). Topogenesis of membrane proteins: Determinants and dynamics. FEBS Letters, 504(3), 87–93. https://doi.org/10.1016/s0014-5793(01)02712-0

Homo sapiens L-asparagine biosynthesis. (n.d.). Retrieved November 13, 2023, from https://biocyc.org/HUMAN/NEW-IMAGE?type=PATHWAY&object=ASPARAGINE-BIOSYNTHESIS

Zhang, L., Zhang, W., Wang, C., Liu, J., Deng, X., Liu, X., Fan, L., & Tan, W. (2016). Responses of CHO-DHFR cells to ratio of asparagine to glutamine in feed media: Cell growth, antibody production, metabolic waste, glutamate, and energy metabolism. Bioresources and Bioprocessing, 3(1), 5. https://doi.org/10.1186/s40643-015-0072-6

Amino Acids—Alanine. (n.d.). Retrieved November 13, 2023, from http://www.biology.arizona.edu/biochemistry/problem_sets/aa/asparagine.html

Gregoret, L. M., & Sauer, R. T. (1998). Tolerance of a protein helix to multiple alanine and valine substitutions. Folding and Design, 3(2), 119–126. https://doi.org/10.1016/S1359-0278(98)00017-0

Kareiviene, V., Pavilonis, A., Sinkute, G., Liegiūte, S., & Gailiene, G. (2006). Staphylococcus aureus resistance to antibiotics and spread of phage types. Medicina (Kaunas, Lithuania), 42(4), 332–339.

Valine. (n.d.). Retrieved November 13, 2023, from http://www.russelllab.org/aas/Val.html

Serine. (n.d.). Retrieved November 13, 2023, from https://go.drugbank.com/drugs/DB00133

IJMS | Free Full-Text | Genomic Features of Antimicrobial Resistance in Staphylococcus pseudintermedius Isolated from Dogs with Pyoderma in Argentina and the United States: A Comparative Study. (n.d.). Retrieved November 13, 2023, from https://www.mdpi.com/1422-0067/24/14/11361

Funaki, T., Yasuhara, T., Kugawa, S., Yamazaki, Y., Sugano, E., Nagakura, Y., Yoshida, K., & Fukuchi, K. (2019). SCCmec typing of PVL-positive community-acquired Staphylococcus aureus (CA-MRSA) at a Japanese hospital. Heliyon, 5(3), e01415. https://doi.org/10.1016/j.heliyon.2019.e01415

Classification of Staphylococcal Cassette Chromosome mec (SCCmec): Guidelines for Reporting Novel SCCmec Elements | Antimicrobial Agents and Chemotherapy. (n.d.). Retrieved November 13, 2023, from https://journals.asm.org/doi/10.1128/aac.00579-09

García-Hidalgo, C. F. (2022). Staphylococcus and Other Catalase-Positive Cocci. In N. Rezaei (Ed.), Encyclopedia of Infection and Immunity (pp. 498–510). Elsevier. https://doi.org/10.1016/B978-0-12-818731-9.00220-2

Ballhausen, B., Kriegeskorte, A., Schleimer, N., Peters, G., & Becker, K. (2014). The mecA Homolog mecC Confers Resistance against β-Lactams in Staphylococcus aureus Irrespective of the Genetic Strain Background. Antimicrobial Agents and Chemotherapy, 58(7), 3791–3798. https://doi.org/10.1128/AAC.02731-13

Published

02-29-2024

How to Cite

Pallikonda, A., & Rodriguez, I. (2024). Comparative structural analysis of MecA encoded beta-lactam resistance in MRSA. Journal of Student Research, 13(1). https://doi.org/10.47611/jsrhs.v13i1.6399

Issue

Section

HS Research Articles