CRISPR Based Gene Editing Technologies in Cancer Research and Detection via miRNA

Authors

  • Edier Carod-Diaz Pinecrest Preparatory High School
  • Laura Prince Pinecrest Preparatory Middle High School

DOI:

https://doi.org/10.47611/jsrhs.v12i3.5001

Keywords:

CRISPR/Cas9, CRISPR/Cas12, CRISPR/Cas13, Cancer, miRNA

Abstract

The CRISPR system of genetic editing has been a breakthrough in all fields of science and medicine, including that of cancer research, therapy, and diagnosis. In the last two years, research has narrowed down on CRISPRs ability to serve as a tool to detect oncogenes in patients to diagnose cancer in a quick and efficient manner. CRISPR and the three key enzymes (cas9, cas12, and cas13) are a revolutionary tool for medicine and cancer trials. MicroRNAs (miRNAs) are short noncoding RNA which regulate gene expression and gene functions, both crucial to cell functions. However, aberrant miRNA is expressed in all tumor proliferation diseases, including cancer. Studies have shown CRISPRs ability to detect cancerous levels of oncogenic MicroRNAs in human samples through a variety of methods such as CRISPR-Cas9/RNAi, CRISPR/Cas12 and RCA coupling, CRISPR/Cas13 exosome coupling, and Cas13a-Cas12a amplification. All of these methods provide extremely quick high sensitivity and high specificity detection of oncogenic miRNA in samples with concentrations below 1 fM. This paper is a synthesis of the current research on the methods mentioned above to aid in the further research of CRISPR/Cas systems in cancer diagnosis and cancer therapeutics.  

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Author Biographies

Edier Carod-Diaz, Pinecrest Preparatory High School

Edier Carod-Diaz is a Junior high school student at Pinecrest Preparatory Middle High School (PPMH). He Is currently part of a PLTW biomedical program through his school's STEM academy and is balancing a full dual enrollment and AP courseload alongside his research pursuits. He is also a secured intern as a receptionist, pediatric assistant, and lab assistant. His future research areas pertain to genetics, internal medicine, oncology, and gene editing technologies like CRISPR. 

Laura Prince, Pinecrest Preparatory Middle High School

Laura Prince is a High school English teacher and a first-year student at the University of Chicago Masters in Humanities Program. She received two bachelor's degrees from the University of Florida in Sociology and English Literature. Her previous fields of research were within Sociology and Criminology, affiliated with the Loss Prevention Research Council. Her current research focus is on Critical Theory and economic disparities in 20th Century poetics.    

References or Bibliography

Anderson, M. W., Reynolds, S. H., You, M., & Maronpot, R. M. (1992). Role of proto-oncogene activation in carcinogenesis. Environmental Health Perspectives, 98, 13–24. https://ehp.niehs.nih.gov/doi/10.1289/ehp.929813

Barrangou, R., Fremaux, C., Deveau, H., Richards, M., Boyaval, P., Moineau, S., Romero, D. A., & Horvath, P. (2007). CRISPR provides acquired resistance against viruses in prokaryotes. Science (New York, N.Y.), 315(5819), 1709–1712. https://doi.org/10.1126/science.1138140

Betel, D., Wilson, M., Gabow, A., Marks, D. S., & Sander, C. (2008). The microRNA.org resource: targets and expression. Nucleic Acids Research, 36(Database issue), D149-153. https://doi.org/10.1093/nar/gkm995

Brun-Usan, M., Thies, C., & Watson, R. A. (2020). How to fit in: The learning principles of cell differentiation. PLOS Computational Biology, 16(4), e1006811. https://doi.org/10.1371/journal.pcbi.1006811

Chen, S., Sanjana, N., Zheng, K., Shalem, O., Lee, K., Shi, X., Scott, D., Song, J., Pan, J., Weissleder, R., Lee, H., Zhang, F., & Sharp, P. (2015, March 15). Genome-wide CRISPR Screen in a Mouse Model of Tumor Growth and Metastasis. Cell. https://www.cell.com/cell/fulltext/S0092-8674(15)00204-4?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0092867415002044%3Fshowall%3Dtrue

Chial, H. (2008). Proto-oncogenes to Oncogenes to Cancer | Learn Science at Scitable. Www.nature.com. https://www.nature.com/scitable/topicpage/Proto-Oncongenes-to-Oncogenes-to-Cancer-883/

GlobalData Healthcare & GlobalData Healthcare. (2022, January 27). Over $1bn raised in venture capital funding for gene editing in 2021. Pharmaceutical Technology. https://www.pharmaceutical-technology.com/comment/venture-capital-gene-editing-funding/

Gostimskaya, I. (2022). CRISPR–Cas9: A History of Its Discovery and Ethical Considerations of Its Use in Genome Editing. Biochemistry (Moscow), 87(8), 777–788. https://doi.org/10.1134/s0006297922080090

Ishino, Y., Krupovic, M., & Forterre, P. (2018). History of CRISPR-Cas from Encounter with a Mysterious Repeated Sequence to Genome Editing Technology. Journal of Bacteriology, 200(7), e00580-17. https://doi.org/10.1128/JB.00580-17

Israels, E. D., & Israels, L. G. (2000). The Cell Cycle. The Oncologist, 5(6), 510–513. https://doi.org/10.1634/theoncologist.5-6-510

Jolany vangah, S., Katalani, C., Booneh, H. A., Hajizade, A., Sijercic, A., & Ahmadian, G. (2020). CRISPR-Based Diagnosis of Infectious and Noninfectious Diseases. Biological Procedures Online, 22(1). https://doi.org/10.1186/s12575-020-00135-3

Kato, S., Han, S.-Y., Liu, W., Otsuka, K., Shibata, H., Kanamaru, R., & Ishioka, C. (2003). Understanding the function–structure and function–mutation relationships of p53 tumor suppressor protein by high-resolution missense mutation analysis. Proceedings of the National Academy of Sciences, 100(14), 8424–8429. https://doi.org/10.1073/pnas.1431692100

Katti, A., Diaz, B. J., Caragine, C. M., Sanjana, N. E., & Dow, L. E. (2022). CRISPR in cancer biology and therapy. Nature Reviews Cancer, 22. https://doi.org/10.1038/s41568-022-00441-w

Kontomanolis, E. N., Koutras, A., Syllaios, A., Schizas, D., Mastoraki, A., Garmpis, N., Diakosavvas, M., Angelou, K., Tsatsaris, G., Pagkalos, A., Ntounis, T., & Fasoulakis, Z. (2020). Role of Oncogenes and Tumor-suppressor Genes in Carcinogenesis: A Review. Anticancer Research, 40(11), 6009–6015. https://doi.org/10.21873/anticanres.14622

Lee, E. Y. H. P., & Muller, W. J. (2010). Oncogenes and Tumor Suppressor Genes. Cold Spring Harbor Perspectives in Biology, 2(10), a003236–a003236. https://doi.org/10.1101/cshperspect.a003236

Li, X.-Y., Du, Y.-C., Zhang, Y.-P., & Kong, D.-M. (2017). Dual functional Phi29 DNA polymerase-triggered exponential rolling circle amplification for sequence-specific detection of target DNA embedded in long-stranded genomic DNA. Scientific Reports, 7(1). https://doi.org/10.1038/s41598-017-06594-1

Morris, S. (n.d.). Knockout. Genome.gov. https://www.genome.gov/genetics-glossary/Knockout#:~:text=A%20knockout%2C%20as%20related%20to

Niu, C., Liu, J., Xing, X., & Zhang, C. (2023). Exploring the Trans-Cleavage Activity with Rolling Circle Amplification for Fast Detection of miRNA. Biodesign Research, 5. https://doi.org/10.34133/bdr.0010

NIH Awards $89 Million for Additional Projects. (2022, March 22). National Center for Advancing Translational Sciences. https://ncats.nih.gov/news/releases/2019/somatic-cells

Pancholi, N. J. (2020, October 22). What is CRISPR-Cas9 and How is it Used in Cancer Research? American Association for Cancer Research (AACR). https://www.aacr.org/blog/2020/10/22/what-is-crispr-cas9-and-how-is-it-used-in-cancer-research/

Schafer, K. A. (1998). The Cell Cycle: A Review. Veterinary Pathology, 35(6), 461–478. https://doi.org/10.1177/030098589803500601

Shalem, O., Sanjana, N., Hartenian, E., Shi, X., Scott, D., Mikkelsen, T., Heckl, D., Ebert, B., Root, D., Doench, J., & Zhang, F. (2013). LentiCRISPRv2 and lentiGuide-Puro: lentiviral CRISPR/Cas9 and single guide RNA. Science, 343(6166). https://doi.org/10.1126/science.1247005

Wu, J. (2011). Regulating cell differentiation at different layers. Journal of Molecular Cell Biology, 3(6), 319–319. https://doi.org/10.1093/jmcb/mjr036

Xu, D., Cai, Y., Tang, L., Han, X., Gao, F., Cao, H., Qi, F., & Kapranov, P. (2020). A CRISPR/Cas13-based approach demonstrates biological relevance of vlinc class of long non-coding RNAs in anticancer drug response. Scientific Reports, 10(1). https://doi.org/10.1038/s41598-020-58104-5

Xu, W., Peng, J., Guo, C., Chai, Y., Zhou, H., Wang, J., & Li, X. (2023). Rapid and ultra-sensitive early detection of cervical cancer using CRISPR/Cas12-based assay based on methylated SEPT9. Sensors and Actuators B: Chemical, 379, 133231. https://doi.org/10.1016/j.snb.2022.133231

Yan, H., Wen, Y., Tian, Z., Hart, N., Han, S., Hughes, S. J., & Zeng, Y. (2023). A one-pot isothermal Cas12-based assay for the sensitive detection of microRNAs. Nature Biomedical Engineering, 1–19. https://doi.org/10.1038/s41551-023-01033-1

Ye, Q., Raese, R., Luo, D., Cao, S., Wan, Y.-W., Qian, Y., & Guo, N. L. (2023). MicroRNA, mRNA, and Proteomics Biomarkers and Therapeutic Targets for Improving Lung Cancer Treatment Outcomes. Cancers, 15(8), 2294. https://doi.org/10.3390/cancers15082294

Zhang, H., Qin, C., An, C., Zheng, X., Wen, S., Chen, W., Liu, X., Lv, Z., Yang, P., Xu, W., Gao, W., & Wu, Y. (2021). Application of the CRISPR/Cas9-based gene editing technique in basic research, diagnosis, and therapy of cancer. Molecular Cancer, 20(1), 126. https://doi.org/10.1186/s12943-021-01431-6

Zhang, J., Guan, M., Ma, C., Liu, Y., Lv, M., Zhang, Z., Gao, H., & Zhang, K. (2023). Highly Effective Detection of Exosomal miRNAs in Plasma Using Liposome-Mediated Transfection CRISPR/Cas13a. ACS Sensors. https://doi.org/10.1021/acssensors.2c01683

Zhao, D., Tang, J., Tan, Q., Xie, X., Zhao, X., & Xing, D. (2023). CRISPR/Cas13a-triggered Cas12a biosensing method for ultrasensitive and specific miRNA detection. Talanta, 260, 124582. https://doi.org/10.1016/j.talanta.2023.124582

Published

08-31-2023

How to Cite

Carod-Diaz, E., & Prince, L. (2023). CRISPR Based Gene Editing Technologies in Cancer Research and Detection via miRNA. Journal of Student Research, 12(3). https://doi.org/10.47611/jsrhs.v12i3.5001

Issue

Section

HS Review Articles