Using Machine Learning to Forecast Progression from Cognitively Normal to Alzheimer's Disease
DOI:
https://doi.org/10.47611/jsrhs.v12i2.4347Keywords:
Alzheimer's Disease, Machine Learning, ProgressionAbstract
Alzheimer's Disease (AD) affects approximately 50 million individuals worldwide and is estimated to rise to 152 million by 2050. There is currently no treatment for AD that halts the progression from cognitively normal (CN) and/or mild cognitive impairment (MCI) to AD. The ability to predict disease progression will allow for early treatment. While Machine Learning (ML) has been successful in diagnosing the cognitive state, further improvement is necessary for predicting progression. In this study, Random Forest and Bagging Decision Tree Recursive Feature Elimination (RFE) was utilized to ascertain the cognitive state and forecast progression. Clinical diagnoses, demographics, and post-processed PET and MRI scans used in this study were obtained from the Open Access Series of Imaging Studies (OASIS). The findings suggest that aging and lower levels of education are associated with higher risk. The study found that ML using post-processed MRI and PET scans, particularly RFE ML, is effective in diagnosing cognitive states with 90% accuracy. It can predict progression from CN to MCI or AD with 85% accuracy, which is significantly higher than the average reported in literature. Patients with progression from CN to AD were distinguished by elevated amyloid deposition, hippocampus and amygdala atrophy, left accumbens atrophy, thinning of the left hemisphere temporal, and enlarged inferior lateral ventricles. The study demonstrated that RFE ML is effective in diagnosing and predicting the progression of AD. Future studies will concentrate on identifying the specific regions of amyloid plaque that have the most significant impact on cognitive state and progression.
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M. Prince, R. Bryce, E. Albanese, W. A. E and W. Ribeiro, "The global prevalence of dementia: a systematic review and metaanalysis," Alzheimers Dementia, vol. 9, pp. 63-75, 2013.
K. Yiannopoulou and S. Papageorgiou, "Current and Future Treatments in Alzheimer Disease: An Update," J. Cent. Nerv. Syst. Dis., vol. 12, 2020.
J. Neugroschl and S. Wang, "Alzheimer’s disease: diagnosis and treatment across the spectrum of disease severity," Mt Sinai J Med, vol. 78, p. 596–612, 2011.
Editorial, "The need for early detection and treatment in Alzheimer’s disease," EBioMedicine, vol. 9, pp. 1-2, 2016.
U. F. a. D. Administration, "Alzheimer’s Disease: Developing Drugs for Treatment Guidance for Industy," February 2018. [Online]. [Accessed 2023].
Z. Breijyeh and R. Karaman, "Comprehensive Review on Alzheimer's Disease: Causes and Treatment," Molecules, vol. 25, no. 24, p. 5789, 2020.
C. Marcus, E. Mena and R. M. Subramaniam, "Brain PET in the Diagnosis of Alzheimer’s Disease," Clin Nucl Med., vol. 39, no. 10, p. e413–e426, October 2014.
A. Ebrahimighahnavieh, S. Luo and R. Chiong, "Deep learning to detect Alzheimer’s disease from neuroimaging: A systematic literature review," Computer Methods and Programs in Biomedicine, vol. 187, p. 105242, 2020.
H. Wang, Y. Shen, S. Wang, T. Xiao, L. Deng, X. Wang and X. Zhao, "Ensemble of 3D densely connected convolutional network for diagnosis of mild cognitive impairment and Alzheimer’s disease," Neurocomputing, vol. 333, p. 145–156, 2019.
S. Esmaeilzadeh, D. I. Belivanis, K. M. Pohl and E. Adeli, "End-To-End Alzheimer's Disease Diagnosis and Biomarker Identification," Mach Learn Med Imaging, vol. 11046, pp. 337-345, 2018.
X. Long, L. Chen, C. Jiang and L. Zhang, "Prediction and classification of Alzheimer disease based on quantification of MRI deformation," PLoS One, vol. 12, pp. 1-19, 2017.
J. Albright, "Forecasting the progression of Alzheimer’s disease using neural network and a novel preprocessing algorithm" Alzheimer’s & Dementia: Translational Research & Clinical Interventions, vol. 5, pp. 483-491, 2019.
P. M. Granitto, C. Furlanello, F. Biasioli and F. Gasperi, "Recursive feature elimination with random forest for PTR-MS analysis of agroindustrial products," Chemometric and Intelligent Laboratory Systmes, vol. 83, no. 2, pp. 83-90, 2006.
P. LaMontagne, T. L. Benzinger, J. C. Morris, S. Keefe, R. Hornbeck, C. Xiong, E. Grant , J. Hassentab, K. Moulder, A. Vlassenko, M. E. Raichle, C. Cruchaga and D. Marcus, "OASIS-3: Longitudinal Neuroimaging, Clinical, and Cognitive Dataset for Normal Aging and Alzheimer's Dissease," 2019.
M. Reuter, N. Schmansky, H. Rosas and B. Fischl, "Within-Subject Template Estimation for Unbiased Longitudinal Image Analysis," Neuroimage, pp. 1402-1418, 2012.
A. F. B. S. M. Dale, "Cortical surface-based analysis. I. Segmentation and surface reconstruction," Neuroimage, vol. 9, pp. 179-194, 1999.
B. S. M. D. A. Fischl, "Cortical surface-based analysis. II: Inflation, flattening, and a surface-based coordinate system," Neuroimage, vol. 9, pp. 195-207, 1999.
Y. Su, T. Blazey, A. Snyder, M. Raichle, D. Marcus, B. Ances, R. Bateman, N. Cairns, P. Aldea, L. Cash, J. Christensen, K. Friedrichsen, R. Hornbeck, A. Farrar, C. Owen, R. Mayeux, A. Brickman, W. Klunk, J. Price, P. Thompson, B. Ghetti, A. Saykin and R. Sperling, "Su, Y. et al. Partial volume correction in quantitative amyloid imaging. NeuroImage," Neuroimage, vol. 107, pp. 55-64, 2015.
Y. Su, G. M. D'Angelo, A. G. Vlassenko, G. Zhou, A. Z. Snyder,, D. S. Marcus, T. M. Blazey, J. . J. Christensen, S. Vora, J. C. Morris, M. A. Mintun and T. L. S. Benzinger, "Quantitative Analysis of PiB-PET with FreeSurfer ROIs," Plos One, vol. 8, p. e73377, 2013.
W. . E. Klunk, R. A. Koeppe, J. C. Price, T. L. Benzinger, M. . D. Devous Sr , W. J. Jagust, K. A. Johnson, C. A. Mathis, D. Minhas, M. J. Pontecorvo, C. C. Rowe, D. M. Skovronsky and M. . A. Mintun, "The Centiloid Project: standardizing quantitative amyloid plaque estimation by PET," Alzheimers Dement, vol. 11, no. 1, pp. 1-15, 2015.
Y. Su, S. Flores, R. Hornbeck, B. Speidel, A. Vlassenko, B. Gordon, R. Koeppe, W. Klunk, C. Xiong, J. Morris and T. Benzinger, "Utilizing the Centiloid scale in cross-sectional and longitudinal PiB PET studies," NeuroImage: Clinical, vol. 19, pp. 406-412, 2018.
J. D. Evans , Straightforward Statistics for the Behavioral Sciences, Pacific Grove, Calif: Brooks/Cole Publishing, 1996.
B. Fischl and A. M. Dale, "Measuring the thickness of the human cerebral cortex from magnetic resonance images," Proc Natl Acad Sci U S A, vol. 97, pp. 11050-11055, 2000.
OASIS-3: IMAGING METHODS AND DATA DICTIONARY Version 2, 2022.
S. Grueso and R. Viejo-Sobera, "Machine learning methods for predicting progression from mild cognitive impairment to Alzheimer’s disease dementia: a systematic review," Alzheimer's Research & Therapy, vol. 13, no. 162, 2021.
X. Nie, Y. Sun, S. Wan, H. Zhao, R. Liu, X. Li, S. Wu, Z. Nedelska, J. Hort, Z. Qing, Y. Xu and B. Zhang, "Subregional Structural Alterations in Hippocampus and Nucleus Accumbens Correlate with the Clinical Impairment in Patients with Alzheimer’s Disease Clinical Spectrum: Parallel Combining Volume and Vertex-Based Approach," Front Neurol., vol. 8, no. 399, 2017.
B. Patenaude, S. M. Smith, D. N. Kennedy and M. Jenkinsona, "A Bayesian model of shape and appearance for subcortical brain segmentation," Neuroimage., vol. 56, no. 3, pp. 907-922, 2012.
A. Qiu, C. Fennema-Notestine, A. M. Dale and M. I. Miller, "Regional shape abnormalities in mild cognitive impairment and Alzheimer's disease," Neuroimage, vol. 45, no. 3, pp. 656-661, 2009.
A. M. Butts, M. M. Machulda, P. Martin, S. A. Przybelski, J. R. Duffy, J. Graff-Radford, D. S. Knopman, R. C. Petersen, C. R. Jack, V. J. Lowe, K. A. Josephs and J. L. Whitwellf, "Temporal Cortical Thickness and Cognitive Associations among Typical and Atypical Phenotypes of Alzheimer’s Disease," J Alzheimers Dis Rep., vol. 6, no. 1, p. 479–491, 2022.
S. Knafo, "Amygdala in Alzheimer's Disease," in The Amygdala - A Discrete Multitasking Manager, B. Ferry, Ed., 2012.
M. Zarei, B. Patenaude, J. Damoiseaux, C. Morgese, S. Smith, P. M. Matthews, F. Barkhof, S. A. R. B. Rombouts, E. Sanz-Arigita and M. Jenkinson, "Combining shape and connectivity analysis: an MRI study of thalamic degeneration in Alzheimer's disease," Neuroimage, vol. 49, no. 1, pp. 1-8, 2010.
J. Min, W.-J. Moon, J. Y. Jeon, J. W. Choi, Y.-S. Moon and S.-H. Han, "Diagnostic Efficacy of Structural MRI in Patients With Mild-to-Moderate Alzheimer Disease: Automated Volumetric Assessment Versus Visual Assessment," AJR Am J Roentgenol, vol. 208, no. 3, pp. 617-623, 2017.
E. S. Sharp and M. Gatz, "The Relationship between Education and Dementia An Updated Systematic Review," Alzheimer Dis Assoc Disord., vol. 25, no. 4, pp. 289-304, 2011.
M. M. Mielke, "Sex and Gender Differences in Alzheimer’s Disease Dementia," Psychiatr Times., vol. 35, no. 11, pp. 14-17, 2018.
R. S. Doody, J. L. M. Vacca, P. Paul J. Massman and e. al, "The Influence of Handedness on the Clinical Presentation and Neuropsychology of Alzheimer Disease," Arch Neurol. ;56(9):. doi:10.1001/archneur.56.9.1133, vol. 56, no. 9, pp. 1133-1137, 1999.
P. Sarkar, "Bagging and Random Forest in Machine Learning," KnowledgeHut, 17 April 2022. [Online]. Available: https://www.knowledgehut.com/blog/data-science/bagging-and-random-forest-in-machine-learning. [Accessed 2023].
W. J. Henneman, J. B. J. v. d. F. W. M. Sluimer, I. C. Sluimer, N. C. Fox, P. V. H. Scheltens and F. Barkhof, "Hippocampal atrophy rates in Alzheimer disease," Neurology., vol. 72, no. 11, p. 999–1007, 2009.
B. Hussain, K. Huh, H. Wing, E. Chan and S. Patanwala, "Surviving in a Random Forest with Imbalanced Datasets," SFU Professional Computer Science, [Online]. Available: https://medium.com/sfu-cspmp/surviving-in-a-random-forest-with-imbalanced-datasets-b98b963d52eb. [Accessed November 2022].
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